STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nup35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (295 aa)    
Predicted Functional Partners:
nup155
Nucleoporin 155.
   
 0.999
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.997
nup98
Nucleoporin 98.
   
 0.995
ndc1
NDC1 transmembrane nucleoporin.
    
 0.994
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
   
 0.993
ENSAOCP00000004571
Uncharacterized protein.
    
 0.992
ENSAOCP00000022539
RanBD1 domain-containing protein.
    
 0.992
ENSAOCP00000022560
Uncharacterized protein.
    
 0.992
nup210
Nucleoporin 210.
    
 0.991
NUP214
Nucleoporin 214.
    
 0.991
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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