BICD2 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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co-expression

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[Homology]

Score

BICD2

BICD cargo adaptor 2. (862 aa)

Predicted Functional Partners:

dctn1

0.872

dctn2

0.866

exd1

0.812

LOC111582390

0.756

LOC111573772

0.756

dync1li2

0.756

LOC111565032

0.733

LOC111578795

0.733

RAB41

0.733

LOC111579855

0.733

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BICD2	LOC111565032	ENSAOCP00000004136	ENSAOCP00000001094	BICD cargo adaptor 2.	RAB6B, member RAS oncogene family a.	0.733
BICD2	LOC111573772	ENSAOCP00000004136	ENSAOCP00000019230	BICD cargo adaptor 2.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.756
BICD2	LOC111578795	ENSAOCP00000004136	ENSAOCP00000007345	BICD cargo adaptor 2.	RAB6B, member RAS oncogene family.	0.733
BICD2	LOC111579855	ENSAOCP00000004136	ENSAOCP00000024999	BICD cargo adaptor 2.	Uncharacterized protein.	0.733
BICD2	LOC111582390	ENSAOCP00000004136	ENSAOCP00000007471	BICD cargo adaptor 2.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.756
BICD2	RAB41	ENSAOCP00000004136	ENSAOCP00000017359	BICD cargo adaptor 2.	RAB41, member RAS oncogene family.	0.733
BICD2	dctn1	ENSAOCP00000004136	ENSAOCP00000026936	BICD cargo adaptor 2.	Dynactin 1a.	0.872
BICD2	dctn2	ENSAOCP00000004136	ENSAOCP00000007622	BICD cargo adaptor 2.	Dynactin 2 (p50).	0.866
BICD2	dync1li2	ENSAOCP00000004136	ENSAOCP00000019977	BICD cargo adaptor 2.	Dynein cytoplasmic 1 light intermediate chain 2.	0.756
BICD2	exd1	ENSAOCP00000004136	ENSAOCP00000005804	BICD cargo adaptor 2.	3'-5' exonuclease domain-containing protein.	0.812
LOC111565032	BICD2	ENSAOCP00000001094	ENSAOCP00000004136	RAB6B, member RAS oncogene family a.	BICD cargo adaptor 2.	0.733
LOC111565032	dctn1	ENSAOCP00000001094	ENSAOCP00000026936	RAB6B, member RAS oncogene family a.	Dynactin 1a.	0.728
LOC111565032	dctn2	ENSAOCP00000001094	ENSAOCP00000007622	RAB6B, member RAS oncogene family a.	Dynactin 2 (p50).	0.515
LOC111573772	BICD2	ENSAOCP00000019230	ENSAOCP00000004136	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	BICD cargo adaptor 2.	0.756
LOC111573772	dctn1	ENSAOCP00000019230	ENSAOCP00000026936	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Dynactin 1a.	0.933
LOC111573772	dctn2	ENSAOCP00000019230	ENSAOCP00000007622	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	Dynactin 2 (p50).	0.902
LOC111578795	BICD2	ENSAOCP00000007345	ENSAOCP00000004136	RAB6B, member RAS oncogene family.	BICD cargo adaptor 2.	0.733
LOC111578795	dctn1	ENSAOCP00000007345	ENSAOCP00000026936	RAB6B, member RAS oncogene family.	Dynactin 1a.	0.728
LOC111578795	dctn2	ENSAOCP00000007345	ENSAOCP00000007622	RAB6B, member RAS oncogene family.	Dynactin 2 (p50).	0.515
LOC111579855	BICD2	ENSAOCP00000024999	ENSAOCP00000004136	Uncharacterized protein.	BICD cargo adaptor 2.	0.733