Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111581174UBX domain-containing protein. (201 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 
 0.958
faf1
Fas (TNFRSF6) associated factor 1.
   
 
 0.934
plaa
Phospholipase A2-activating protein.
    
 
 0.929
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.928
faf2
Fas associated factor family member 2.
   
 
 0.923
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.914
LOC111577936
Zgc:136908; Belongs to the AAA ATPase family.
   
 0.914
btbd9
BTB (POZ) domain containing 9.
    
   0.886
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.862
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.834
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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