Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111587547Homeobox domain-containing protein. (325 aa)    
Predicted Functional Partners:
lrp4
Low density lipoprotein receptor-related protein 4.
      
 0.515
htatip2
HIV-1 Tat interactive protein 2.
   
  
 0.515
prmt3
Protein arginine methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
      
 0.472
sema3c
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family.
      
 0.456
LOC111568062
LIM domain only 1.
    
 
 0.444
lmo3
LIM domain only 3.
    
 
 0.444
irx3
Iroquois homeobox 3a.
    
 
 0.439
nell2
Neural EGFL like 2a.
    
 
 0.428
NRTN
Neurturin.
      
 0.428
SYNDIG1
Synapse differentiation inducing 1.
      
 0.428
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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