Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
eea1Early endosome antigen 1. (1400 aa)    
Predicted Functional Partners:
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
     
 0.943
LOC111578364
RAB5A, member RAS oncogene family, a.
    
 0.943
LOC111566728
Uncharacterized protein.
    
 0.943
LOC111566129
RAB5A, member RAS oncogene family, b.
    
 0.943
LOC111584799
RAB5C, member RAS oncogene family.
    
 0.943
lamp1
Lysosomal associated membrane protein 1a.
      
 0.910
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 
 0.892
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate.
    
 
 0.892
stam
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
    
 
 0.884
LOC111578719
Lysosomal associated membrane protein 1b.
      
 0.803
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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