Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC111563034PHD-type domain-containing protein. (1396 aa)    
Predicted Functional Partners:
LOC111581044
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.980
rsf1
Remodeling and spacing factor 1b, tandem duplicate 1.
     
 
0.900
BPTF
Bromodomain PHD finger transcription factor.
   
 
0.807
chrac1
Chromatin accessibility complex subunit 1.
     
 0.764
pole3
Polymerase (DNA directed), epsilon 3 (p17 subunit).
     
 0.717
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
   
0.648
arid4b
Translocase of outer mitochondrial membrane 20.
   
    0.646
arid4a
AT rich interactive domain 4A (RBP1-like).
   
    0.646
LOC111567816
CECR2 histone acetyl-lysine reader.
    
 0.625
virma
Vir like m6A methyltransferase associated.
   
   0.612
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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