STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klhdc8bKelch domain containing 8B. (359 aa)    
Predicted Functional Partners:
rrp36
Ribosomal RNA processing 36.
      
 0.571
TOGARAM1
TOG array regulator of axonemal microtubules 1.
      
 0.570
TMEM43
Uncharacterized protein.
      
 0.507
pkdcc
Protein kinase domain containing, cytoplasmic b.
     
 0.498
LOC111583729
Ubiquitin specific peptidase 11; Belongs to the peptidase C19 family.
   
  
 0.488
kbtbd12
Kelch repeat and BTB (POZ) domain containing 12.
    
0.472
LOC111566297
Trafficking protein particle complex 6b-like.
   
  
 0.441
trappc6b
Trafficking protein particle complex 6b.
   
  
 0.441
cacul1
CDK2 associated cullin domain 1; Belongs to the cullin family.
    
 0.436
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.436
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.