STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111585729Cadherin 28; Cadherins are calcium-dependent cell adhesion proteins. (915 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.994
LOC111573771
Uncharacterized protein.
   
 0.974
LOC111564883
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
  
  
 
0.901
LOC111566303
Junction plakoglobin a.
   
 0.830
LOC111582920
Uncharacterized protein.
   
 0.829
mmp9
Matrix metallopeptidase 9.
     
 0.751
ARVCF
ARVCF delta catenin family member b.
    
 0.729
LOC111567506
Catenin (cadherin-associated protein), delta 1.
    
 0.729
CTNND1
Catenin delta 1.
    
 0.729
cbll1
Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase.
    
 
 0.664
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.