Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC111583692Cytochrome b561 family, member A3a. (288 aa)    
Predicted Functional Partners:
pprc1
PPARG related coactivator 1.
      
 0.591
LOC111586476
Chromo domain-containing protein.
    
   0.531
CDYL2
Chromodomain Y like 2.
    
   0.531
LOC111568781
Chromodomain protein, Y-like.
    
   0.531
IPP
Intracisternal A particle-promoted polypeptide.
      
 0.513
gfm1
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]
      
 0.501
LOC111575836
Transcobalamin II.
      
 0.436
ciao2b
Cytosolic iron-sulfur assembly component 2B.
      
 0.418
LOC111578873
Serine active site containing 1.
      
 0.412
LOC111586016
Uncharacterized protein.
      
 0.412
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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