vbp1 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cct4	cct7	ENSAOCP00000028841	ENSAOCP00000031518	T-complex protein 1 subunit delta.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
cct4	pfdn1	ENSAOCP00000028841	ENSAOCP00000015883	T-complex protein 1 subunit delta.	Prefoldin subunit 1.	0.805
cct4	pfdn2	ENSAOCP00000028841	ENSAOCP00000028937	T-complex protein 1 subunit delta.	Prefoldin subunit 2.	0.906
cct4	pfdn4	ENSAOCP00000028841	ENSAOCP00000018521	T-complex protein 1 subunit delta.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.893
cct4	pfdn5	ENSAOCP00000028841	ENSAOCP00000003175	T-complex protein 1 subunit delta.	Prefoldin 5.	0.943
cct4	pfdn6	ENSAOCP00000028841	ENSAOCP00000000689	T-complex protein 1 subunit delta.	Prefoldin subunit 6.	0.920
cct4	tcp1	ENSAOCP00000028841	ENSAOCP00000007589	T-complex protein 1 subunit delta.	T-complex 1.	0.999
cct4	vbp1	ENSAOCP00000028841	ENSAOCP00000004484	T-complex protein 1 subunit delta.	Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family.	0.871
cct7	cct4	ENSAOCP00000031518	ENSAOCP00000028841	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	T-complex protein 1 subunit delta.	0.999
cct7	pfdn1	ENSAOCP00000031518	ENSAOCP00000015883	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 1.	0.770
cct7	pfdn2	ENSAOCP00000031518	ENSAOCP00000028937	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 2.	0.891
cct7	pfdn4	ENSAOCP00000031518	ENSAOCP00000018521	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.892
cct7	pfdn5	ENSAOCP00000031518	ENSAOCP00000003175	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin 5.	0.875
cct7	pfdn6	ENSAOCP00000031518	ENSAOCP00000000689	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 6.	0.791
cct7	tcp1	ENSAOCP00000031518	ENSAOCP00000007589	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	T-complex 1.	0.999
cct7	vbp1	ENSAOCP00000031518	ENSAOCP00000004484	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family.	0.926
cct7	vhl	ENSAOCP00000031518	ENSAOCP00000004628	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	Von Hippel-Lindau tumor suppressor.	0.600
pdrg1	pfdn1	ENSAOCP00000016997	ENSAOCP00000015883	P53 and DNA-damage regulated 1.	Prefoldin subunit 1.	0.905
pdrg1	pfdn2	ENSAOCP00000016997	ENSAOCP00000028937	P53 and DNA-damage regulated 1.	Prefoldin subunit 2.	0.991
pdrg1	pfdn4	ENSAOCP00000016997	ENSAOCP00000018521	P53 and DNA-damage regulated 1.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.991