STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111580653DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (691 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.983
pdcd11
Programmed cell death 11.
   
 0.953
UTP14C
UTP14C small subunit processome component.
   
 0.935
NOL6
Nucleolar protein 6.
   
 0.934
nol6
Nucleolar protein 6.
   
 0.934
LOC111576306
Zona pellucida glycoprotein d.
   
 0.923
krr1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.923
ddx24
DEAD (Asp-Glu-Ala-Asp) box helicase 24.
  
0.911
wdr46
WD repeat domain 46.
   
 
 0.907
LOC111582680
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31; Belongs to the DEAD box helicase family.
  
0.906
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.