Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111581971Transmembrane channel-like protein. (696 aa)    
Predicted Functional Partners:
scn3b
Sodium channel, voltage-gated, type III, beta.
      
 0.539
cnih1
Cornichon family AMPA receptor auxiliary protein 1.
    
 0.445
LOC111576980
Ras homolog, mTORC1 binding.
    
 0.427
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.421
nop16
NOP16 nucleolar protein homolog (yeast).
      
 0.409
smoc2
SPARC related modular calcium binding 2.
      
 0.405
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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