parva protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Experiments

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[Homology]

Score

parva

Parvin, alpha a. (372 aa)

Predicted Functional Partners:

ILK

0.994

LOC111566051

0.993

pxn

0.985

LOC111571209

0.985

LOC111585137

0.920

LOC111579826

0.920

LOC111566270

0.920

rsu1

0.915

LOC111575387

0.913

LOC111577642

0.913

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ILK	LOC111566051	ENSAOCP00000005315	ENSAOCP00000012229	Integrin linked kinase.	Uncharacterized protein.	0.900
ILK	LOC111571209	ENSAOCP00000005315	ENSAOCP00000008650	Integrin linked kinase.	Paxillin b.	0.971
ILK	LOC111575387	ENSAOCP00000005315	ENSAOCP00000004704	Integrin linked kinase.	LIM and senescent cell antigen-like domains 2.	0.938
ILK	LOC111577642	ENSAOCP00000005315	ENSAOCP00000032427	Integrin linked kinase.	LIM domain-containing protein.	0.938
ILK	parva	ENSAOCP00000005315	ENSAOCP00000004565	Integrin linked kinase.	Parvin, alpha a.	0.994
ILK	pxn	ENSAOCP00000005315	ENSAOCP00000000965	Integrin linked kinase.	Uncharacterized protein.	0.971
ILK	rsu1	ENSAOCP00000005315	ENSAOCP00000010683	Integrin linked kinase.	Ras suppressor protein 1.	0.958
LOC111566051	ILK	ENSAOCP00000012229	ENSAOCP00000005315	Uncharacterized protein.	Integrin linked kinase.	0.900
LOC111566051	LOC111571209	ENSAOCP00000012229	ENSAOCP00000008650	Uncharacterized protein.	Paxillin b.	0.970
LOC111566051	LOC111575387	ENSAOCP00000012229	ENSAOCP00000004704	Uncharacterized protein.	LIM and senescent cell antigen-like domains 2.	0.938
LOC111566051	LOC111577642	ENSAOCP00000012229	ENSAOCP00000032427	Uncharacterized protein.	LIM domain-containing protein.	0.938
LOC111566051	parva	ENSAOCP00000012229	ENSAOCP00000004565	Uncharacterized protein.	Parvin, alpha a.	0.993
LOC111566051	pxn	ENSAOCP00000012229	ENSAOCP00000000965	Uncharacterized protein.	Uncharacterized protein.	0.970
LOC111566051	rsu1	ENSAOCP00000012229	ENSAOCP00000010683	Uncharacterized protein.	Ras suppressor protein 1.	0.958
LOC111566270	LOC111571209	ENSAOCP00000031240	ENSAOCP00000008650	Uncharacterized protein.	Paxillin b.	0.928
LOC111566270	LOC111579826	ENSAOCP00000031240	ENSAOCP00000009047	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC111566270	LOC111585137	ENSAOCP00000031240	ENSAOCP00000002331	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC111566270	parva	ENSAOCP00000031240	ENSAOCP00000004565	Uncharacterized protein.	Parvin, alpha a.	0.920
LOC111566270	pxn	ENSAOCP00000031240	ENSAOCP00000000965	Uncharacterized protein.	Uncharacterized protein.	0.928
LOC111571209	ILK	ENSAOCP00000008650	ENSAOCP00000005315	Paxillin b.	Integrin linked kinase.	0.971