STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
greb1lGREB1 like retinoic acid receptor coactivator. (1949 aa)    
Predicted Functional Partners:
SH3RF3
SH3 domain containing ring finger 3.
      
 0.589
LOC111570317
E1A binding protein p300 b.
    
 0.573
LOC111574397
E1A binding protein p300 a.
    
 0.573
LOC111582511
CREB binding protein b.
    
  0.568
LOC111569890
CREB binding protein a.
    
  0.568
LOC111582077
TUB like protein 4a; Belongs to the TUB family.
      
 0.542
ENSAOCP00000004695
Nuclear receptor domain-containing protein.
    
 0.532
armt1
Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.
    
 0.532
LOC111586778
Uncharacterized protein.
    
 0.532
LOC111588998
Estrogen receptor 2a.
    
 0.532
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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