Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
atpaf1ATP synthase mitochondrial F1 complex assembly factor 1. (311 aa)    
Predicted Functional Partners:
atpaf2
ATP synthase mitochondrial F1 complex assembly factor 2.
   
 
 0.948
LOC111579207
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.926
LOC111575637
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.926
rev3l
REV3 like, DNA directed polymerase zeta catalytic subunit.
      
 0.916
ogg1
8-oxoguanine DNA glycosylase.
      
 0.817
cdca8
Cell division cycle associated 8.
    
 
 0.786
LOC111566437
Pumilio RNA-binding family member 2.
    
 
 0.757
pum1
Pumilio RNA-binding family member 1.
    
 
 0.757
eral1
Era-like 12S mitochondrial rRNA chaperone 1.
    
   0.735
atp5f1c
ATP synthase subunit gamma.
   
  
 0.712
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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