STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dennd6bDENN/MADD domain containing 6B. (603 aa)    
Predicted Functional Partners:
atp6v1f
ATPase H+ transporting V1 subunit F.
      
 0.485
LOC111566297
Trafficking protein particle complex 6b-like.
      
 0.424
ENSAOCP00000008266
RUN domain-containing protein.
      
 0.422
uaca
Uveal autoantigen with coiled-coil domains and ankyrin repeats b.
      
 0.422
rusc2
RUN and SH3 domain containing 2.
      
 0.422
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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