STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhx9LIM homeobox 9. (399 aa)    
Predicted Functional Partners:
LOC111581958
LIM-domain binding 1b.
    
 0.689
ldb2
LIM domain binding 2a.
    
 0.689
LOC111578862
LIM domain binding 1a.
    
 0.689
LOC111562461
Uncharacterized protein.
      
 0.597
LOC111578884
Doublesex and mab-3 related transcription factor 1.
    
 
 0.585
amh
Anti-Mullerian hormone.
    
 
 0.574
vwa8
Von Willebrand factor A domain containing 8.
      
 0.441
fezf1
FEZ family zinc finger 1.
  
 
 0.439
LOC111568062
LIM domain only 1.
   
 
0.428
lmo3
LIM domain only 3.
   
 
0.428
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.