Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lhx9LIM homeobox 9. (399 aa)    
Predicted Functional Partners:
LOC111562461
Uncharacterized protein.
      
 0.851
LOC111581958
LIM-domain binding 1b.
    
 0.720
ldb2
LIM domain binding 2a.
    
 0.720
LOC111578862
LIM domain binding 1a.
    
 0.720
LOC111568062
LIM domain only 1.
   
 
 0.676
lmo3
LIM domain only 3.
   
 
 0.676
ppp1r7
Protein phosphatase 1, regulatory (inhibitor) subunit 7.
    
 
 0.633
vwa8
Von Willebrand factor A domain containing 8.
    
 
 0.626
khk
Ketohexokinase.
    
   0.621
irak1bp1
Interleukin-1 receptor-associated kinase 1 binding protein 1.
      
 0.600
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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