Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tmem223Transmembrane protein 223. (238 aa)    
Predicted Functional Partners:
tmem53
Transmembrane protein 53.
      
 0.752
tmem147
Transmembrane protein 147.
   
  
 0.748
taf6l
TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.
      
 0.716
smim4
Small integral membrane protein 4.
      
 0.705
tmem101
Transmembrane protein 101.
      
 0.705
ppme1
Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated.
      
 0.650
tmem154
Uncharacterized protein.
      
 0.642
gatad1
GATA zinc finger domain containing 1.
      
 0.622
tmem38a
Transmembrane protein 38A.
      
 0.618
nxf1
Zgc:153681.
      
 0.592
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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