Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDCD2LProgrammed cell death 2 like. (410 aa)    
Predicted Functional Partners:
prmt3
Protein arginine methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
   
 
 0.982
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.846
znf277
Zinc finger protein 277.
   
 
 0.762
LOC111574234
Zgc:92429.
    
   0.755
LOC111582534
Nucleosome assembly protein 1-like 4a; Belongs to the nucleosome assembly protein (NAP) family.
   
   0.714
bysl
Bystin-like.
   
  
 0.679
Wdpcp
WD repeat containing planar cell polarity effector.
    
 
 0.617
pabpn1
Poly(A) binding protein, nuclear 1.
      
 0.617
LOC111585754
Hydroxysteroid (17-beta) dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.617
perp
P53 apoptosis effector related to pmp22.
      
 0.594
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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