Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111578898BHLH domain-containing protein. (117 aa)    
Predicted Functional Partners:
gdap2
Ganglioside induced differentiation associated protein 2.
      
 0.586
wdr3
WD repeat domain 3.
      
 0.586
LOC111588954
Zgc:91849.
      
 0.544
LOC111578418
Transcription factor 12.
    
 0.542
LOC111577269
BHLH domain-containing protein.
    
 0.542
tcf3
Transcription factor 3b.
    
 0.542
LOC111572320
Transcription factor 3a.
    
 0.542
TCF4
Transcription factor 4.
    
 0.542
ENSAOCP00000020818
Uncharacterized protein.
    
 0.542
gsc
Goosecoid.
    
 0.445
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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