Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbx3T-box transcription factor 3a. (681 aa)    
Predicted Functional Partners:
shox2
Short stature homeobox 2.
    
 
 0.516
kntc1
Kinetochore associated 1.
      
 0.512
nkx2-5
NK2 homeobox 5.
   
 0.497
alx1
ALX homeobox 1.
    
 
 0.438
gata4
GATA binding protein 4.
    
 0.437
LOC111565888
Uncharacterized protein.
     
 0.414
LOC111566107
Uncharacterized protein.
    
 0.412
LOC111566093
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
  0.410
LOC111581166
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
  0.410
LOC111584424
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
  0.410
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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