ccdc124 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111563382	LOC111563426	ENSAOCP00000015966	ENSAOCP00000027974	Ribosomal protein S19.	SERPINE1 mRNA binding protein 1a.	0.820
LOC111563382	LOC111587365	ENSAOCP00000015966	ENSAOCP00000032396	Ribosomal protein S19.	SERPINE1 mRNA binding protein 1b.	0.820
LOC111563382	abce1	ENSAOCP00000015966	ENSAOCP00000025538	Ribosomal protein S19.	ATP-binding cassette, sub-family E (OABP), member 1.	0.891
LOC111563382	ccdc124	ENSAOCP00000015966	ENSAOCP00000004887	Ribosomal protein S19.	Coiled-coil domain containing 124.	0.696
LOC111563382	eif3j	ENSAOCP00000015966	ENSAOCP00000026677	Ribosomal protein S19.	Eukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.726
LOC111563382	rpl23a	ENSAOCP00000015966	ENSAOCP00000022444	Ribosomal protein S19.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.994
LOC111563382	rpl35	ENSAOCP00000015966	ENSAOCP00000019609	Ribosomal protein S19.	Ribosomal protein L35.	0.993
LOC111563382	rpl8	ENSAOCP00000015966	ENSAOCP00000029227	Ribosomal protein S19.	Ribosomal protein L8.	0.994
LOC111563426	LOC111563382	ENSAOCP00000027974	ENSAOCP00000015966	SERPINE1 mRNA binding protein 1a.	Ribosomal protein S19.	0.820
LOC111563426	ccdc124	ENSAOCP00000027974	ENSAOCP00000004887	SERPINE1 mRNA binding protein 1a.	Coiled-coil domain containing 124.	0.796
LOC111563426	rpl23a	ENSAOCP00000027974	ENSAOCP00000022444	SERPINE1 mRNA binding protein 1a.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.913
LOC111563426	rpl35	ENSAOCP00000027974	ENSAOCP00000019609	SERPINE1 mRNA binding protein 1a.	Ribosomal protein L35.	0.856
LOC111563426	rpl8	ENSAOCP00000027974	ENSAOCP00000029227	SERPINE1 mRNA binding protein 1a.	Ribosomal protein L8.	0.898
LOC111587365	LOC111563382	ENSAOCP00000032396	ENSAOCP00000015966	SERPINE1 mRNA binding protein 1b.	Ribosomal protein S19.	0.820
LOC111587365	ccdc124	ENSAOCP00000032396	ENSAOCP00000004887	SERPINE1 mRNA binding protein 1b.	Coiled-coil domain containing 124.	0.754
LOC111587365	rpl23a	ENSAOCP00000032396	ENSAOCP00000022444	SERPINE1 mRNA binding protein 1b.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.913
LOC111587365	rpl35	ENSAOCP00000032396	ENSAOCP00000019609	SERPINE1 mRNA binding protein 1b.	Ribosomal protein L35.	0.861
LOC111587365	rpl8	ENSAOCP00000032396	ENSAOCP00000029227	SERPINE1 mRNA binding protein 1b.	Ribosomal protein L8.	0.898
abce1	LOC111563382	ENSAOCP00000025538	ENSAOCP00000015966	ATP-binding cassette, sub-family E (OABP), member 1.	Ribosomal protein S19.	0.891
abce1	ccdc124	ENSAOCP00000025538	ENSAOCP00000004887	ATP-binding cassette, sub-family E (OABP), member 1.	Coiled-coil domain containing 124.	0.800