Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF208Ring finger protein 208. (230 aa)    
Predicted Functional Partners:
foxh1
Forkhead box H1.
    
 0.696
ENSAOCP00000023356
Nanos homolog 2; Belongs to the nanos family.
    
 
 0.521
pet100
PET100 cytochrome c oxidase chaperone.
      
 0.468
UBE3A
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
     
 0.455
LOC111586210
SERTA domain-containing protein.
      
 0.449
LOC111580879
Carbonic anhydrase IV c; Belongs to the alpha-carbonic anhydrase family.
      
 0.401
LOC111575646
TGF_BETA_2 domain-containing protein.
      
 0.401
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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