Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pds5bPDS5 cohesin associated factor B. (1406 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.986
wapl
WAPL cohesin release factor a.
   
 0.950
LOC111569267
WAPL cohesin release factor b.
   
 0.950
nipbl
Nipped-B protein.
   
 0.945
LOC111566828
Nipped-B protein.
   
 0.945
smc1a
Structural maintenance of chromosomes protein.
   
 0.943
pds5a
PDS5 cohesin associated factor A.
  
  
0.919
esco2
Establishment of sister chromatid cohesion N-acetyltransferase 2.
   
 0.912
ENSAOCP00000004205
SMC_N domain-containing protein.
   
 0.910
LOC111576336
Structural maintenance of chromosomes protein.
   
 0.910
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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