STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pds5bPDS5 cohesin associated factor B. (1406 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.984
wapl
WAPL cohesin release factor a.
   
 0.933
LOC111569267
WAPL cohesin release factor b.
   
 0.933
LOC111589125
RAD21 cohesin complex component a.
   
 0.927
LOC111582055
RAD21 cohesin complex component like 1.
   
 0.927
LOC111584127
Uncharacterized protein.
   
 0.927
smc1a
Structural maintenance of chromosomes protein.
   
 0.919
ENSAOCP00000004205
SMC_N domain-containing protein.
   
 0.912
LOC111576336
Structural maintenance of chromosomes protein.
   
 0.912
nipbl
Nipped-B protein.
   
 0.899
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.