Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ttc38Tetratricopeptide repeat domain 38. (466 aa)    
Predicted Functional Partners:
mansc4
MANSC domain-containing protein.
      
 0.705
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
      
 0.684
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
      
 0.646
kiaa1958
Uncharacterized protein.
      
 0.615
hdhd2
Haloacid dehalogenase-like hydrolase domain containing 2.
      
 0.614
zcchc17
Zinc finger, CCHC domain containing 17.
      
 0.613
enosf1
Enolase superfamily member 1.
      
 0.590
bms1
BMS1 ribosome biogenesis factor.
      
 0.539
lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
      
 0.524
LOC111584731
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
      
 0.524
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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