Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gramd1cGRAM domain containing 1c. (662 aa)    
Predicted Functional Partners:
gramd2b
GRAM domain-containing protein.
    
 
 0.879
LOC111571177
GRAM domain-containing protein.
    
 
 0.879
ENSAOCP00000001267
Uncharacterized protein.
 
  
 
 0.866
gramd1b
GRAM domain containing 1Bb.
    
 
 0.842
LOC111571509
Tetraspanin.
    
   0.790
LOC111581458
Tetraspanin.
    
   0.790
LOC111584726
Thioredoxin-related transmembrane protein 1.
    
 
 0.728
gtpbp8
EngB-type G domain-containing protein.
      
 0.723
LOC111582135
Tetraspanin.
    
   0.691
cunh12orf66
Si:ch211-125a15.1.
      
 0.689
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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