snx12 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111566639	LOC111570544	ENSAOCP00000005325	ENSAOCP00000007641	Uncharacterized protein.	Uncharacterized protein.	0.688
LOC111566639	LOC111588772	ENSAOCP00000005325	ENSAOCP00000002627	Uncharacterized protein.	RAB7a, member RAS oncogene family.	0.900
LOC111566639	snx12	ENSAOCP00000005325	ENSAOCP00000005256	Uncharacterized protein.	Sorting nexin 12.	0.792
LOC111566639	snx3	ENSAOCP00000005325	ENSAOCP00000001590	Uncharacterized protein.	Sorting nexin 3.	0.773
LOC111566639	vps26a	ENSAOCP00000005325	ENSAOCP00000017783	Uncharacterized protein.	VPS26, retromer complex component A.	0.903
LOC111566639	vps26b	ENSAOCP00000005325	ENSAOCP00000015340	Uncharacterized protein.	VPS26, retromer complex component B.	0.688
LOC111566639	vps29	ENSAOCP00000005325	ENSAOCP00000017928	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.920
LOC111566639	vps35	ENSAOCP00000005325	ENSAOCP00000021652	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.915
LOC111570544	LOC111566639	ENSAOCP00000007641	ENSAOCP00000005325	Uncharacterized protein.	Uncharacterized protein.	0.688
LOC111570544	LOC111588772	ENSAOCP00000007641	ENSAOCP00000002627	Uncharacterized protein.	RAB7a, member RAS oncogene family.	0.688
LOC111570544	WLS	ENSAOCP00000007641	ENSAOCP00000022448	Uncharacterized protein.	Uncharacterized protein.	0.643
LOC111570544	snx12	ENSAOCP00000007641	ENSAOCP00000005256	Uncharacterized protein.	Sorting nexin 12.	0.894
LOC111570544	snx3	ENSAOCP00000007641	ENSAOCP00000001590	Uncharacterized protein.	Sorting nexin 3.	0.894
LOC111570544	vps26a	ENSAOCP00000007641	ENSAOCP00000017783	Uncharacterized protein.	VPS26, retromer complex component A.	0.991
LOC111570544	vps26b	ENSAOCP00000007641	ENSAOCP00000015340	Uncharacterized protein.	VPS26, retromer complex component B.	0.900
LOC111570544	vps29	ENSAOCP00000007641	ENSAOCP00000017928	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.986
LOC111570544	vps35	ENSAOCP00000007641	ENSAOCP00000021652	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.991
LOC111570544	wls	ENSAOCP00000007641	ENSAOCP00000017933	Uncharacterized protein.	Wnt ligand secretion mediator.	0.663
LOC111588772	LOC111566639	ENSAOCP00000002627	ENSAOCP00000005325	RAB7a, member RAS oncogene family.	Uncharacterized protein.	0.900
LOC111588772	LOC111570544	ENSAOCP00000002627	ENSAOCP00000007641	RAB7a, member RAS oncogene family.	Uncharacterized protein.	0.688