Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC111570666Histone domain-containing protein; Belongs to the histone H2B family. (124 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.822
glyr1
Glyoxylate reductase 1 homolog (Arabidopsis).
    
   0.582
rps27a
Ribosomal protein S27a.
   
  0.558
LOC111583696
Tumor protein p53 binding protein, 1.
    
 0.544
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.542
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.542
mdc1
Uncharacterized protein.
    
 0.536
paxip1
PAX interacting (with transcription-activation domain) protein 1.
    
 0.536
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 0.535
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.519
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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