Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSAOCP00000005328Neuralized E3 ubiquitin protein ligase 1Aa. (412 aa)    
Predicted Functional Partners:
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.892
gsap
Gamma-secretase activating protein.
   
 
 0.718
nbr1
NBR1 autophagy cargo receptor a.
   
 
 0.718
sqstm1
Sequestosome 1.
   
 
 0.718
epn1
Epsin 1.
    
 
 0.670
LOC111571869
Epsin 3b.
    
 
 0.670
ENSAOCP00000007347
ENTH domain-containing protein.
    
 
 0.670
epn2
Epsin 2.
    
 
 0.670
ENSAOCP00000010302
Uncharacterized protein.
    
 
 0.670
LOC111565801
Zgc:194578.
    
 
 0.670
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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