STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111563689High mobility group box 1b. (200 aa)    
Predicted Functional Partners:
becn1
Beclin 1, autophagy related.
    
 0.932
LOC111588264
High mobility group box 1a.
  
  
 
0.901
LOC111563904
Calreticulin.
   
  
 0.700
LOC111575488
Calreticulin.
   
  
 0.700
LOC111564044
Calreticulin.
   
  
 0.700
actr8
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
 0.659
LOC111568891
Calpain 8; Belongs to the peptidase C2 family.
    
 
 0.658
LOC111585239
Calpain 2, (m/II) large subunit, like; Belongs to the peptidase C2 family.
    
 
 0.656
LOC111568893
Calpain 2, (m/II) large subunit, like; Belongs to the peptidase C2 family.
    
 
 0.656
LOC111568895
Calpain 2, (m/II) large subunit b; Belongs to the peptidase C2 family.
    
 
 0.656
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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