Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc1a1Amino acid transporter. (524 aa)    
Predicted Functional Partners:
slc3a1
Solute carrier family 3 member 1.
   
 
 0.689
slc7a5
Solute carrier family 7 member 5.
   
 
 0.593
LOC111566145
PRA1 family protein.
    
 
 0.556
arl6ip5
PRA1 family protein.
    
 
 0.556
slc38a9
Solute carrier family 38 member 9.
      
 0.543
slc38a11
Solute carrier family 38 member 11.
      
 0.516
blmh
Bleomycin hydrolase; Belongs to the peptidase C1 family.
      
 0.512
LOC111583473
Solute carrier family 7 member 9.
   
 
 0.489
LOC111565895
Solute carrier family 7 member 1a.
   
 
 0.489
LOC111584697
Zmp:0000001267.
   
 
 0.489
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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