Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC111588267Cytochrome c oxidase assembly factor 4 homolog. (83 aa)    
Predicted Functional Partners:
ssbp1
Single-stranded DNA binding protein 1.
   
 
 0.848
sdhaf4
Succinate dehydrogenase complex assembly factor 4.
      
 0.775
cmc2
COX assembly mitochondrial protein.
   
 
 0.772
msh6
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
    
 
 0.754
smim20
Small integral membrane protein 20.
   
  
 0.737
lyrm7
LYR motif containing 7; Belongs to the complex I LYR family.
   
  
 0.703
LOC111578541
Cytochrome c oxidase assembly factor 6.
   
 
 0.689
cmc4
Uncharacterized protein.
    
 0.685
zdhhc4
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.684
LOC111571627
Cytochrome c oxidase assembly factor COX19.
   
 
 0.633
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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