Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Limch1DUF4757 domain-containing protein. (156 aa)    
Predicted Functional Partners:
ENSAOCP00000016908
Calponin-homology (CH) domain-containing protein.
 
 
    0.884
thyn1
Thymocyte nuclear protein 1.
      
 0.503
LOC111585503
Miff domain-containing protein.
    
 0.450
mff
Mitochondrial fission factor.
    
 0.450
LOC111573553
Uncharacterized protein.
    
 0.424
ENSAOCP00000003773
DIX domain-containing protein.
    
 0.424
LOC111571691
Dishevelled segment polarity protein 2.
    
 0.424
dvl1
Dishevelled segment polarity protein 1a.
    
 0.424
LOC111576801
Dishevelled segment polarity protein 3a.
    
 0.424
Plekhg1
DH domain-containing protein.
      
 0.407
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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