Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111586344Ral guanine nucleotide dissociation stimulator. (653 aa)    
Predicted Functional Partners:
LOC111565328
Zgc:55558.
   
 0.779
CSDE1
Cold shock domain containing E1, RNA-binding.
   
 0.779
hras
HRas proto-oncogene, GTPase a.
   
 0.779
kras
V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog.
   
 0.779
rala
V-ral simian leukemia viral oncogene homolog Aa (ras related).
   
 0.683
LOC111584932
Uncharacterized protein.
   
 0.683
ralb
V-ral simian leukemia viral oncogene homolog Ba (ras related).
   
 0.683
LOC111585086
Uncharacterized protein.
    
 0.675
LOC111572080
RAP1A, member of RAS oncogene family a.
    
 0.675
LOC111586839
Uncharacterized protein.
    
 0.675
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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