STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111577675Uncharacterized protein. (474 aa)    
Predicted Functional Partners:
dcp1b
Decapping mRNA 1B.
   
 0.973
dcp2
Decapping mRNA 2.
  
 0.958
dcp1a
Decapping mRNA 1A.
   
 0.958
edc4
Enhancer of mRNA decapping 4.
   
 0.927
LOC111585879
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.917
LOC111568794
PAT1 homolog 2.
    
 0.917
LOC111562609
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.911
LOC111564218
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.
   
 0.911
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 0.911
LOC111587610
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
  
  
 
0.901
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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