LOC111577675 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC111577675

Uncharacterized protein. (474 aa)

Predicted Functional Partners:

edc4

0.989

dcp2

0.989

dcp1a

0.989

dcp1b

0.979

lsm4

0.950

LOC111562609

0.939

LOC111564218

0.939

ddx6

0.939

xrn1

0.930

LOC111587610

0.901

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111562609	LOC111564218	ENSAOCP00000003027	ENSAOCP00000004218	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.900
LOC111562609	LOC111577675	ENSAOCP00000003027	ENSAOCP00000005597	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.939
LOC111562609	LOC111587610	ENSAOCP00000003027	ENSAOCP00000020990	Uncharacterized protein; Belongs to the DEAD box helicase family.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.939
LOC111562609	dcp1a	ENSAOCP00000003027	ENSAOCP00000030312	Uncharacterized protein; Belongs to the DEAD box helicase family.	Decapping mRNA 1A.	0.976
LOC111562609	dcp1b	ENSAOCP00000003027	ENSAOCP00000032101	Uncharacterized protein; Belongs to the DEAD box helicase family.	Decapping mRNA 1B.	0.954
LOC111562609	dcp2	ENSAOCP00000003027	ENSAOCP00000022626	Uncharacterized protein; Belongs to the DEAD box helicase family.	Decapping mRNA 2.	0.958
LOC111562609	ddx6	ENSAOCP00000003027	ENSAOCP00000017707	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.901
LOC111562609	edc4	ENSAOCP00000003027	ENSAOCP00000022182	Uncharacterized protein; Belongs to the DEAD box helicase family.	Enhancer of mRNA decapping 4.	0.976
LOC111562609	lsm4	ENSAOCP00000003027	ENSAOCP00000021542	Uncharacterized protein; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.912
LOC111562609	xrn1	ENSAOCP00000003027	ENSAOCP00000009607	Uncharacterized protein; Belongs to the DEAD box helicase family.	5'-3' exoribonuclease 1.	0.738
LOC111564218	LOC111562609	ENSAOCP00000004218	ENSAOCP00000003027	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.900
LOC111564218	LOC111577675	ENSAOCP00000004218	ENSAOCP00000005597	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.939
LOC111564218	LOC111587610	ENSAOCP00000004218	ENSAOCP00000020990	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.939
LOC111564218	dcp1a	ENSAOCP00000004218	ENSAOCP00000030312	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	Decapping mRNA 1A.	0.976
LOC111564218	dcp1b	ENSAOCP00000004218	ENSAOCP00000032101	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	Decapping mRNA 1B.	0.954
LOC111564218	dcp2	ENSAOCP00000004218	ENSAOCP00000022626	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	Decapping mRNA 2.	0.958
LOC111564218	ddx6	ENSAOCP00000004218	ENSAOCP00000017707	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.901
LOC111564218	edc4	ENSAOCP00000004218	ENSAOCP00000022182	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	Enhancer of mRNA decapping 4.	0.976
LOC111564218	lsm4	ENSAOCP00000004218	ENSAOCP00000021542	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.912
LOC111564218	xrn1	ENSAOCP00000004218	ENSAOCP00000009607	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	5'-3' exoribonuclease 1.	0.738