STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111585695C1q domain-containing protein. (746 aa)    
Predicted Functional Partners:
col8a2
Collagen, type VIII, alpha 2.
     
  0.561
col6a1
Collagen, type VI, alpha 1.
  
0.512
COPS6
COP9 signalosome subunit 6.
    
 0.455
lrig3
Leucine-rich repeats and immunoglobulin-like domains 3.
    
 
 0.443
LOC111571306
Collagen, type VI, alpha 2.
  
0.441
ENSAOCP00000009972
Uncharacterized protein.
  
0.433
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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