Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
exd13'-5' exonuclease domain-containing protein. (537 aa)    
Predicted Functional Partners:
LOC111577259
Dynein light chain.
    
 
 0.846
DYNLL2
Dynein light chain.
    
 
 0.846
LOC111577739
Dynein light chain.
    
 
 0.846
LOC111567806
Bicaudal D homolog 1a.
    
 
 0.812
BICD2
BICD cargo adaptor 2.
    
 
 0.812
LOC111573495
Uncharacterized protein.
    
 
 0.812
LOC111571958
Bicaudal D homolog 2 (Drosophila).
    
 
 0.812
LOC111588337
Zgc:162200.
    
 
 0.812
dnal4
Dynein light chain.
    
 
 0.760
tdrd5
Uncharacterized protein.
   
  
 0.750
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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