USF2 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111569890	LOC111570317	ENSAOCP00000012700	ENSAOCP00000014681	CREB binding protein a.	E1A binding protein p300 b.	0.998
LOC111569890	LOC111574397	ENSAOCP00000012700	ENSAOCP00000016355	CREB binding protein a.	E1A binding protein p300 a.	0.998
LOC111569890	LOC111582511	ENSAOCP00000012700	ENSAOCP00000004064	CREB binding protein a.	CREB binding protein b.	0.901
LOC111569890	USF2	ENSAOCP00000012700	ENSAOCP00000005940	CREB binding protein a.	Upstream transcription factor 2, c-fos interacting.	0.690
LOC111569890	med1	ENSAOCP00000012700	ENSAOCP00000017723	CREB binding protein a.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.700
LOC111569890	sp1	ENSAOCP00000012700	ENSAOCP00000020916	CREB binding protein a.	Sp1 transcription factor.	0.988
LOC111569890	usf1	ENSAOCP00000012700	ENSAOCP00000015393	CREB binding protein a.	Upstream transcription factor 1.	0.604
LOC111570317	LOC111569890	ENSAOCP00000014681	ENSAOCP00000012700	E1A binding protein p300 b.	CREB binding protein a.	0.998
LOC111570317	LOC111574397	ENSAOCP00000014681	ENSAOCP00000016355	E1A binding protein p300 b.	E1A binding protein p300 a.	0.901
LOC111570317	LOC111582511	ENSAOCP00000014681	ENSAOCP00000004064	E1A binding protein p300 b.	CREB binding protein b.	0.998
LOC111570317	USF2	ENSAOCP00000014681	ENSAOCP00000005940	E1A binding protein p300 b.	Upstream transcription factor 2, c-fos interacting.	0.602
LOC111570317	med1	ENSAOCP00000014681	ENSAOCP00000017723	E1A binding protein p300 b.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.760
LOC111570317	sp1	ENSAOCP00000014681	ENSAOCP00000020916	E1A binding protein p300 b.	Sp1 transcription factor.	0.993
LOC111570317	usf1	ENSAOCP00000014681	ENSAOCP00000015393	E1A binding protein p300 b.	Upstream transcription factor 1.	0.691
LOC111574397	LOC111569890	ENSAOCP00000016355	ENSAOCP00000012700	E1A binding protein p300 a.	CREB binding protein a.	0.998
LOC111574397	LOC111570317	ENSAOCP00000016355	ENSAOCP00000014681	E1A binding protein p300 a.	E1A binding protein p300 b.	0.901
LOC111574397	LOC111582511	ENSAOCP00000016355	ENSAOCP00000004064	E1A binding protein p300 a.	CREB binding protein b.	0.998
LOC111574397	USF2	ENSAOCP00000016355	ENSAOCP00000005940	E1A binding protein p300 a.	Upstream transcription factor 2, c-fos interacting.	0.602
LOC111574397	med1	ENSAOCP00000016355	ENSAOCP00000017723	E1A binding protein p300 a.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.760
LOC111574397	sp1	ENSAOCP00000016355	ENSAOCP00000020916	E1A binding protein p300 a.	Sp1 transcription factor.	0.993