STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111588215Lebercilin LCA5. (702 aa)    
Predicted Functional Partners:
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.947
trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.945
trappc9
Trafficking protein particle complex 9.
    
 0.944
trappc2
Trafficking protein particle complex 2.
    
 0.944
trappc8
Trafficking protein particle complex 8.
    
 0.944
trappc2l
Trafficking protein particle complex 2-like.
   
 0.944
trappc11
Trafficking protein particle complex 11.
    
 0.927
trappc5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.913
LOC111568499
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.913
trappc12
Trafficking protein particle complex 12.
    
 0.910
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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