Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cacfd1Calcium channel flower domain containing 1. (168 aa)    
Predicted Functional Partners:
tmem159
Uncharacterized protein.
    
   0.789
rabepk
Rab9 effector protein with kelch motifs.
      
 0.721
LOC111586732
Actin related protein 1, centractin.
      
 0.688
mmaa
Metabolism of cobalamin associated A.
      
 0.645
tmem181
Transmembrane protein 181.
      
 0.617
b3galt6
Hexosyltransferase.
      
 0.615
fam163b
Family with sequence similarity 163 member B, genome duplicate a.
      
 0.613
ENSAOCP00000029726
Zmp:0000001301.
      
 0.613
atg4b
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
      
 0.612
ascc2
Activating signal cointegrator 1 complex subunit 2.
      
 0.603
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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