Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111567715Programmed cell death 10b. (210 aa)    
Predicted Functional Partners:
ccm2
CCM2 scaffold protein.
    
 0.992
slmap
Sarcolemma associated protein a.
   
 
 0.908
LOC111583822
MOB family member 4, phocein.
   
 
 0.903
pdcd10
Programmed cell death 10a.
  
  
 
0.901
fgfr1op2
FGFR1 oncogene partner 2.
   
 
 0.867
LOC111572487
CTTNBP2 N-terminal like a.
    
 
 0.865
LOC111574385
CTTNBP2 N-terminal like b.
    
 
 0.865
LOC111587249
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.842
LOC111588344
Sarcolemma associated protein b.
   
 
 0.799
strip1
Striatin interacting protein 1.
    
 
 0.795
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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