Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSPH1Radial spoke head component 1. (241 aa)    
Predicted Functional Partners:
LOC111564067
Radial spoke head component 4A.
   
 
 0.992
rsph9
Radial spoke head 9 homolog.
   
 
 0.991
rsph3
Radial spoke head 3.
   
 
 0.972
ccdc65
NYD-SP28 domain-containing protein.
   
 
 0.943
dnai2
Dynein, axonemal, intermediate chain 2b.
   
 
 0.941
cfap52
Cilia and flagella associated protein 52.
   
 0.940
LOC111587289
Uncharacterized protein.
   
 
 0.938
ccdc39
Uncharacterized protein.
   
 
 0.937
dnali1
Dynein, axonemal, light intermediate chain 1.
   
 
 0.936
ccdc40
Coiled-coil domain containing 40.
   
 
 0.936
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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