ENSAOCP00000006372 protein (Amphiprion ocellaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000006372	LOC111562778	ENSAOCP00000006372	ENSAOCP00000012316	Fork-head domain-containing protein.	Runt-related transcription factor.	0.539
ENSAOCP00000006372	LOC111578471	ENSAOCP00000006372	ENSAOCP00000016836	Fork-head domain-containing protein.	Runt-related transcription factor.	0.539
ENSAOCP00000006372	LOC111586389	ENSAOCP00000006372	ENSAOCP00000004374	Fork-head domain-containing protein.	SRY-box transcription factor 5.	0.488
ENSAOCP00000006372	LOC111587448	ENSAOCP00000006372	ENSAOCP00000008529	Fork-head domain-containing protein.	SRY-box transcription factor 5.	0.488
ENSAOCP00000006372	cbfb	ENSAOCP00000006372	ENSAOCP00000007343	Fork-head domain-containing protein.	Core-binding factor subunit beta.	0.520
ENSAOCP00000006372	med8	ENSAOCP00000006372	ENSAOCP00000019055	Fork-head domain-containing protein.	Mediator of RNA polymerase II transcription subunit 8; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.504
ENSAOCP00000006372	prdm14	ENSAOCP00000006372	ENSAOCP00000019523	Fork-head domain-containing protein.	PR domain containing 14.	0.554
ENSAOCP00000006372	runx2	ENSAOCP00000006372	ENSAOCP00000005260	Fork-head domain-containing protein.	Runt-related transcription factor.	0.539
ENSAOCP00000006372	tfb2m	ENSAOCP00000006372	ENSAOCP00000022799	Fork-head domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.500
ENSAOCP00000006372	tfec	ENSAOCP00000006372	ENSAOCP00000027646	Fork-head domain-containing protein.	Transcription factor EC.	0.492
LOC111562778	ENSAOCP00000006372	ENSAOCP00000012316	ENSAOCP00000006372	Runt-related transcription factor.	Fork-head domain-containing protein.	0.539
LOC111562778	cbfb	ENSAOCP00000012316	ENSAOCP00000007343	Runt-related transcription factor.	Core-binding factor subunit beta.	0.964
LOC111578471	ENSAOCP00000006372	ENSAOCP00000016836	ENSAOCP00000006372	Runt-related transcription factor.	Fork-head domain-containing protein.	0.539
LOC111578471	cbfb	ENSAOCP00000016836	ENSAOCP00000007343	Runt-related transcription factor.	Core-binding factor subunit beta.	0.964
LOC111586389	ENSAOCP00000006372	ENSAOCP00000004374	ENSAOCP00000006372	SRY-box transcription factor 5.	Fork-head domain-containing protein.	0.488
LOC111586389	LOC111587448	ENSAOCP00000004374	ENSAOCP00000008529	SRY-box transcription factor 5.	SRY-box transcription factor 5.	0.759
LOC111586389	prdm14	ENSAOCP00000004374	ENSAOCP00000019523	SRY-box transcription factor 5.	PR domain containing 14.	0.516
LOC111587448	ENSAOCP00000006372	ENSAOCP00000008529	ENSAOCP00000006372	SRY-box transcription factor 5.	Fork-head domain-containing protein.	0.488
LOC111587448	LOC111586389	ENSAOCP00000008529	ENSAOCP00000004374	SRY-box transcription factor 5.	SRY-box transcription factor 5.	0.759
LOC111587448	prdm14	ENSAOCP00000008529	ENSAOCP00000019523	SRY-box transcription factor 5.	PR domain containing 14.	0.516