STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111573520T-box transcription factor 18. (514 aa)    
Predicted Functional Partners:
shox2
Short stature homeobox 2.
   
 
 0.630
tcf21
Transcription factor 21.
      
 0.602
nkx2-5
NK2 homeobox 5.
    
 
 0.592
jmjd1c
Jumonji domain containing 1Cb.
  
   
 0.462
gata4
GATA binding protein 4.
   
 
 0.453
LOC111580929
Short stature homeobox.
   
 
 0.431
HCN4
Hyperpolarization activated cyclic nucleotide gated potassium channel 4.
      
 0.414
hcn4
Hyperpolarization activated cyclic nucleotide-gated potassium channel 4.
      
 0.414
actr10
Actin related protein 10; Belongs to the actin family.
      
 0.400
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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