STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aptxAprataxin. (333 aa)    
Predicted Functional Partners:
xrcc1
X-ray repair complementing defective repair in Chinese hamster cells 1.
    
 
 0.851
LOC111576022
Uncharacterized protein.
    
 
 0.834
tdp1
Tyrosyl-DNA phosphodiesterase 1.
    
 
 0.759
lig4
DNA ligase.
   
 
 0.725
lig3
DNA ligase.
   
 
 0.702
ogg1
8-oxoguanine DNA glycosylase.
    
 
 0.678
parp2
Poly [ADP-ribose] polymerase.
   
 
 0.677
APLF
Aprataxin and PNKP like factor.
      
 0.676
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
      
 0.675
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
      
 0.665
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.