Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111564840Fibronectin 1b. (2453 aa)    
Predicted Functional Partners:
LOC111564477
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.901
LOC111578352
Fibronectin 1a.
  
  
 
0.901
itgb3
Integrin beta; Belongs to the integrin beta chain family.
     
  0.900
LOC111567785
Integrin beta; Belongs to the integrin beta chain family.
     
  0.900
itgb6
Integrin beta; Belongs to the integrin beta chain family.
     
  0.900
itga3
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
     
  0.900
cd44
Link domain-containing protein.
     
  0.900
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
     
  0.900
itga4
Integrin alpha 4; Belongs to the integrin alpha chain family.
     
  0.900
LOC111588666
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
     
  0.900
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
Server load: low (10%) [HD]