STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf144aRBR-type E3 ubiquitin transferase. (295 aa)    
Predicted Functional Partners:
prkdc
Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family.
    
 0.930
rps27a
Ribosomal protein S27a.
    
 0.771
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.679
LOC111566873
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.679
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
      
 0.602
rnf216
Ring finger protein 216.
    
 0.577
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.573
trappc12
Trafficking protein particle complex 12.
      
 0.570
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.567
LOC111579330
Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.544
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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