LOC111585649 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111564563	LOC111575271	ENSAOCP00000031066	ENSAOCP00000024228	RRM domain-containing protein.	RRM domain-containing protein.	0.951
LOC111564563	LOC111585649	ENSAOCP00000031066	ENSAOCP00000006850	RRM domain-containing protein.	RRM domain-containing protein.	0.807
LOC111564563	pnisr	ENSAOCP00000031066	ENSAOCP00000008804	RRM domain-containing protein.	Uncharacterized protein.	0.406
LOC111564563	pnn	ENSAOCP00000031066	ENSAOCP00000025024	RRM domain-containing protein.	Pinin, desmosome associated protein.	0.589
LOC111564563	srrm1	ENSAOCP00000031066	ENSAOCP00000016773	RRM domain-containing protein.	Serine/arginine repetitive matrix 1.	0.889
LOC111564597	LOC111571415	ENSAOCP00000014568	ENSAOCP00000003878	RNA binding motif protein 25b.	Uncharacterized protein.	0.954
LOC111564597	LOC111579376	ENSAOCP00000014568	ENSAOCP00000025812	RNA binding motif protein 25b.	RNA binding motif protein 25a.	0.901
LOC111564597	LOC111585649	ENSAOCP00000014568	ENSAOCP00000006850	RNA binding motif protein 25b.	RRM domain-containing protein.	0.791
LOC111564597	LOC111588359	ENSAOCP00000014568	ENSAOCP00000002987	RNA binding motif protein 25b.	RNA binding motif protein 39b.	0.954
LOC111564597	pnisr	ENSAOCP00000014568	ENSAOCP00000008804	RNA binding motif protein 25b.	Uncharacterized protein.	0.731
LOC111564597	pnn	ENSAOCP00000014568	ENSAOCP00000025024	RNA binding motif protein 25b.	Pinin, desmosome associated protein.	0.809
LOC111564597	srrm1	ENSAOCP00000014568	ENSAOCP00000016773	RNA binding motif protein 25b.	Serine/arginine repetitive matrix 1.	0.989
LOC111571415	LOC111564597	ENSAOCP00000003878	ENSAOCP00000014568	Uncharacterized protein.	RNA binding motif protein 25b.	0.954
LOC111571415	LOC111575271	ENSAOCP00000003878	ENSAOCP00000024228	Uncharacterized protein.	RRM domain-containing protein.	0.605
LOC111571415	LOC111579376	ENSAOCP00000003878	ENSAOCP00000025812	Uncharacterized protein.	RNA binding motif protein 25a.	0.954
LOC111571415	LOC111585649	ENSAOCP00000003878	ENSAOCP00000006850	Uncharacterized protein.	RRM domain-containing protein.	0.810
LOC111571415	pnisr	ENSAOCP00000003878	ENSAOCP00000008804	Uncharacterized protein.	Uncharacterized protein.	0.845
LOC111571415	pnn	ENSAOCP00000003878	ENSAOCP00000025024	Uncharacterized protein.	Pinin, desmosome associated protein.	0.830
LOC111571415	srrm1	ENSAOCP00000003878	ENSAOCP00000016773	Uncharacterized protein.	Serine/arginine repetitive matrix 1.	0.790
LOC111575271	LOC111564563	ENSAOCP00000024228	ENSAOCP00000031066	RRM domain-containing protein.	RRM domain-containing protein.	0.951