LOC111568924 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000016726	LOC111568924	ENSAOCP00000016726	ENSAOCP00000006882	NR LBD domain-containing protein.	Uncharacterized protein.	0.590
ENSAOCP00000016726	LOC111585297	ENSAOCP00000016726	ENSAOCP00000018144	NR LBD domain-containing protein.	Estrogen-related receptor alpha.	0.418
ENSAOCP00000016726	med1	ENSAOCP00000016726	ENSAOCP00000017723	NR LBD domain-containing protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.653
ENSAOCP00000016726	nrip1	ENSAOCP00000016726	ENSAOCP00000001947	NR LBD domain-containing protein.	Nuclear receptor interacting protein 1b.	0.415
ENSAOCP00000016726	ppargc1a	ENSAOCP00000016726	ENSAOCP00000003446	NR LBD domain-containing protein.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.429
LOC111568924	ENSAOCP00000016726	ENSAOCP00000006882	ENSAOCP00000016726	Uncharacterized protein.	NR LBD domain-containing protein.	0.590
LOC111568924	LOC111581099	ENSAOCP00000006882	ENSAOCP00000007901	Uncharacterized protein.	Peroxisome proliferator-activated receptor gamma, coactivator 1 beta.	0.816
LOC111568924	LOC111582028	ENSAOCP00000006882	ENSAOCP00000002882	Uncharacterized protein.	POU domain protein.	0.751
LOC111568924	LOC111585297	ENSAOCP00000006882	ENSAOCP00000018144	Uncharacterized protein.	Estrogen-related receptor alpha.	0.774
LOC111568924	LOC111587330	ENSAOCP00000006882	ENSAOCP00000014101	Uncharacterized protein.	NR LBD domain-containing protein.	0.708
LOC111568924	NR0B1	ENSAOCP00000006882	ENSAOCP00000031496	Uncharacterized protein.	Nuclear receptor subfamily 0 group B member 1.	0.708
LOC111568924	med1	ENSAOCP00000006882	ENSAOCP00000017723	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.590
LOC111568924	nr0b2	ENSAOCP00000006882	ENSAOCP00000014657	Uncharacterized protein.	Nuclear receptor subfamily 0, group B, member 2a.	0.590
LOC111568924	nrip1	ENSAOCP00000006882	ENSAOCP00000001947	Uncharacterized protein.	Nuclear receptor interacting protein 1b.	0.824
LOC111568924	ppargc1a	ENSAOCP00000006882	ENSAOCP00000003446	Uncharacterized protein.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.883
LOC111581099	LOC111568924	ENSAOCP00000007901	ENSAOCP00000006882	Peroxisome proliferator-activated receptor gamma, coactivator 1 beta.	Uncharacterized protein.	0.816
LOC111581099	LOC111585297	ENSAOCP00000007901	ENSAOCP00000018144	Peroxisome proliferator-activated receptor gamma, coactivator 1 beta.	Estrogen-related receptor alpha.	0.939
LOC111581099	ppargc1a	ENSAOCP00000007901	ENSAOCP00000003446	Peroxisome proliferator-activated receptor gamma, coactivator 1 beta.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.464
LOC111582028	LOC111568924	ENSAOCP00000002882	ENSAOCP00000006882	POU domain protein.	Uncharacterized protein.	0.751
LOC111582028	LOC111585297	ENSAOCP00000002882	ENSAOCP00000018144	POU domain protein.	Estrogen-related receptor alpha.	0.555