Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111580562Ig-like domain-containing protein. (220 aa)    
Predicted Functional Partners:
LOC111566221
CD40 molecule, TNF receptor superfamily member 5.
   
  
 0.627
LOC111569482
CD4-1 molecule.
      
 0.601
cd8a
Ig-like domain-containing protein.
      
 0.532
il10
Interleukin 10.
      
 0.520
LOC111566322
CD40 ligand; Belongs to the tumor necrosis factor family.
      
 0.478
LOC111580399
Interleukin-1; Belongs to the IL-1 family.
   
  
 0.473
ptprc
Protein tyrosine phosphatase receptor type C.
    
 
 0.448
LOC111575150
Si:ch211-212k18.7.
   
  
 0.442
LOC111564824
Lymphocyte antigen 75.
      
 0.431
LOC111570760
Ig-like domain-containing protein.
      
 0.413
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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